SE4520003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3091
  • Cannabis sativa
  • SE4520003
  • Mutator
  • M2
  • scaffold21088:25742-26124
  • TTTTTAATA
  • TTAATAGGAATATTTGCGGCGAAATTCTCTTAATATTTCTAATTATTACACATATGACTTTAATAAAGAAAAAGTGTCGACAAAAGTACATTATCTTACGATTTTGTTGCAGTTGTATCTTTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TTT    -T   A       C           C         C     A     C                     A   T  A    A   CA                            C        A  A TAAGTGTCAACTCAGAAACACGTAGCGACATATTATTAGACTACATATTAAATAAGC
   TTAA  AGG ATATTTG GGCGAAATTCT TTAATATTT TAATT TTACA ATATGACTTTAATAAAGAAAA GTG CG CAAA GTA  TTATCTTACGATTTTGTTGCAGTTGTAT TTTTTTTG CC T                                                         
   ||||  ||| ||||||| ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||| ||| || |||| |||  |||||||||||||||||||||||||||| |||||||| || |                                                         T
   AATT  TCC TATAAAC CCGCTTTAGGG AATTGTAAA ATTAA AATGT TATATTGGGATTATTTTTTTT CAC GC GTTT CAT  AATAGAATGTTAAAACAACGTCAGCATG AAAAAAAC AA C                                                         
 AT    TT   C       A           A         C     C     A                     -   C  C    A   AA                            A        A  - AATTTACAGTTAATTCGGGCAATTTACGGTCGAGTTTTTGTGTACCGCTATAAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End