Plant MITE

SE4520004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3092
Cannabis sativa
SE4520004
Mutator
M3
scaffold25358:4997-5244
TATATAATT
TAGGGATATGATTTTGTCCCGTGATGTACTTTCACGGAATGTATTCCGTGGTAC

Secondary structure and sequence

TSD TIR

5'

3'

TATATAAT                      -GA              A    T      --    ATTA       CTC      CATTAAATGTGTGTCAGAGTACGTTTCTACTTTTTAACCCTAA
        TAGGGATATGATTTTGTCCCGT   TGTACTTTCACGGA TGTA TCCGTG  GTAC    GATGGGT   AGGGTA                                           
        ||||||||||||||||||||||   |||||||||||||| |||| ||||||  ||||    |||||||   ||||||                                           C
        ATCCCTATACTAAAACAGGGCA   ACATGAAAGTGCCT ACAT AGGCAC  CATG    AGTCGGC   AGTCTA                                           
ATTAATAT                      ATA              A    T      TA    ---C       ---      CTCCCTCAATAAATTAGACTGCCGACTCTAACTACATCCCCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520004

TATATAATTAGGGATATGATTTTGTCCCGTGATGTACTTTCACGGAATGTATTCCGTGGTACATTAGATGGGTCTCAGGGTACATTAAATGTGTGTCAGAGTACGTTTCTACTTTTTAACCCTAACAACCCCTACATCAATCTCAGCCGTCAGATTAAATAACTCCCTCATCTGACGGCTGACGTACATCACGGATTACAATCCGTGAAAGTACAATAACGGGACAAAATCATATCCCTATATAATTA

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