Plant MITE

SE4520006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3094
Cannabis sativa
SE4520006
Mutator
M5
scaffold99768:1430-1734
TATTAGATG
GGGAAACTTACAAATATACTGGAATTTGGGTTAACTTTTACAAAAATACTGTCA

Secondary structure and sequence

TSD TIR

5'

3'

TATTAGAT      C     -AA       GA    GG    -AC                   CACATAA       - AAAAA           -------ATAAAAC  --    AAAAC - AAAGCAGAACAACTCAAAACAACAGTAGAACACTAGT
        GGGAAA TTACA   TATACTG  ATTT  GTTA   TTTTACAAAAATACTGTCA       ATTTTTT C     TACTGTGTTTT              AC  TAGT     A C                                     
        |||||| |||||   |||||||  ||||  ||||   |||||||||||||||||||       ||||||| |     |||||||||||              ||  ||||     | |                                      
        CCCTTT AATGT   ATATGAT  TGAA  CGGT   AGAATGTTTTTATGACAGT       TAAAAAA G     ATGACACAAAA              TG  GTCA     T T                                     
TAGATTAT      A     ACC       --    AA    AAA                   -CCGCCA       T AAAAA           AAATATTCAAAGTA  AC    ----- A GACACAATTCAAAAGTGACCACAAGATGACCACAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520006

TATTAGATGGGAAACTTACAAATATACTGGAATTTGGGTTAACTTTTACAAAAATACTGTCACACATAAATTTTTTCAAAAATACTGTGTTTTATAAAACACTAGTAAAACACAAAGCAGAACAACTCAAAACAACAGTAGAACACTAGTAAAACACCAGTAGAACACCAGTGAAAACTTAACACAGTATACTGCAGTATGAAACTTATAAAAAAACACAGTAAAAAAGTAAAAAATACCGCCTGACAGTATTTTTGTAAGAAAATGGCAAAAGTTAGTATACCATGTAAATTTCCCTATTAGAT

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