Plant MITE

SE4520008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3096
Cannabis sativa
SE4520008
Mutator
M6
scaffold80059:1851-2089
ATTAATTAA
TTAATTAAGGGGC

Secondary structure and sequence

TSD TIR

5'

3'

A        G    TTTTTTATTC    A   TAAAACA        -----          TT   A ----------------AAAA    ACATAGAAACCCCTATTGCAACTAGCGCTACAACCTAAATTG
 TTAATTAA GGGC          TTAC CTT       ATTTTTTT     TTTTTTTTCA  TTT C                    TTCT                                          
 |||||||| ||||          |||| |||       ||||||||     ||||||||||  ||| |                    ||||                                           
 AATTAATT CCCG          AATG GAG       TAAAAAAA     AAAAAAAAGT  AAA G                    AACG                                          
         A    --------TT    -   TATATCA        TTGAA          TT   C CTAAACCCAAAAATTTCACC    TCGCGATCAACGTTATCCCCAAAGATATGCTAAAAAAACAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520008

ATTAATTAAGGGGCTTTTTTATTCTTACACTTTAAAACAATTTTTTTTTTTTTTTCATTTTTACAAAATTCTACATAGAAACCCCTATTGCAACTAGCGCTACAACCTAAATTGCAACAAAAAAATCGTATAGAAACCCCTATTGCAACTAGCGCTGCAACCACTTTAAAAACCCAAATCGCAAATTTGAAAAAAAAAAGTTAAAAAAATACTATATGAGGTAATTGCCCATTAATTAA

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