SE4530009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3097
  • Cannabis sativa
  • SE4530009
  • hAT
  • Hat3
  • scaffold10003:13702-14075
  • ATCCAAAC
  • TAGGGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCCAAAC        -----T   T       GAAAAACCGAAACCGACCATCAAACCGACCAGACCGTAACCGAATTTTCGGTTCCACGTCATCACCGAATTTGGCGGTCGGTTTCGGTTTCGGTTTTTTTGACACGGCGGTCGGTTTCGGTTCTTGAAATAAAAAAATAGTTTAACCAAAAAACCGT
        TAGGGGTG      TCA AAAAACC                                                                                                                                                             
        ||||||||      ||| |||||||                                                                                                                                                              
        ATCCCCAC      CCA GCCAATA                                                                                                                                                             
CAAACCTA        TTTTAG   -       CCAGCCAAAAATTTTAAAATATTGGCTGGCCTGCCAATGCCAAAAATAAAATGCTTTTGGCATTGGCTGGCAAATCTTTAATATTGGCATATTTTGGCTGGCATGCCAAAAACCGCCAAAAGCCAAACCGCCAAAATCCGCCAAAAACCGCCAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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