SE4520013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3101
  • Cannabis sativa
  • SE4520013
  • Mutator
  • M8
  • scaffold39816:1707-2105
  • TAATTATTA
  • TAATTATTAGGGTAAATAGCGGCATAAGTACCCAAAATTTTGAGTTTGTAAGCGGTACAAACTCAATGAGTTTTTTTAGTGGCATAAGTACTCAATGTTTGTAAAACTGTAATTTTTTTCTATTTTCGTCAGTACAGGCTCCGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    T              C       G        A     A              C   C       G                                                   -A    C              C   TTA    TTTTTTAAAAAAAAAGATTTAGAAGTAATTGATACTACATATTTTTTG
TAAT ATTAGGGTAAATAG GGCATAA TACCCAAA TTTTG GTTTGTAAGCGGTA AAA TCAATGA TTTTTTTAGTGGCATAAGTACTCAATGTTTGTAAAACTGTAATTTTTTTCT  TTTT GTCAGTACAGGCTC GTT   AAGT                                                
|||| |||||||||||||| ||||||| |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||   ||||                                                 
ATTA TAATCCCATTTATC CTGTATT ATGGGTTT AAAAT CAAACATTCGCCGT TTT GGTTACT AAAAAAATCACCGTATTCATGGGTTACAAATATTTTGACATTAAAAGAAGG  AAAA TAGTCATGTCTGAG CAA   ACAG                                                
    T              A       A        C     C              A   A       A                                                   GC    -              A   -TA    AATTTGTCCTGTGTATTTTCTGGATTTAAAATCTAATAAACCAAACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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