SE4520014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3102
  • Cannabis sativa
  • SE4520014
  • Mutator
  • M9
  • scaffold86532:2639-3016
  • TAACTTATA
  • TAGAGTAATTTGCGGTATAAATACCTAAGTTTAACTCCAAGTTGTAAATAAATACCTACGTTTAATTTTTTACGATAATAATACCTAAGTTATATTTCTGGAACTTCTATAGGTACATGACTATTAATTATTAAGTAAATTGCCATGTAGCAATCTCTGATTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TAACTTA            C           C           CCA                   C           TA  A                      C         T        A   CTA    TTA        A TG C     G  ATC   G      CCAC  CA        TTT
       TAGAGTAATTTG GGTATAAATAC TAAGTTTAACT   AGTTGTAAATAAATACCTA GTTTAATTTTT  CG TAATAATACCTAAGTTATATTT TGGAACTTC ATAGGTAC TGA   TTAA   TTAAGTAA T  C ATGTA CA   TCT ATTGGT    GT  TTAATTTT   
       |||||||||||| ||||||||||| |||||||||||   ||||||||||||||||||| |||||||||||  || |||||||||||||||||||||| ||||||||| |||||||| |||   ||||   |||||||| |  | ||||| ||   ||| ||||||    ||  ||||||||   C
       ATCTCATTAAAC CCGTATTTATG ATTCAAATTGA   TCAACGTTTATTTATGGAT CAAATTAAAAA  GC ATTATTATGGATTCAATATAAA ACCTTGAAG TATCCATG ATT   AATT   AGTTTATT A  G TGCAT GT   AGA TAACCA    TA  AATTAAAG   
ATATTCA            A           A           AAG                   T           CC  C                      A         -        G   AGC    TAC        A TA A     A  AAA   A      ----  TA        TTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End