SE4550015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3103
  • Cannabis sativa
  • SE4550015
  • PIF/harbinger
  • To1
  • scaffold34520:66445-66862
  • TTA
  • AGGGTGCGTTTGGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      C        AGCCACAA        G  TTG    ----  ---    GAGATAATTACACAATTTGACATGTTTGTCTGACCATGTAATTACACTGTAACTGTGTAATTGGAAGTAATTGAGGGGTTCTAATTACACTCTCCAATTCTCATGCCCCCCATGAGAATTGAATGTAATTACACTATGTAATTGTTAAAAACTTTCCATATT
  AGGGTG GTTTGGAA        TGTAATTA AT   TGTG    TA   ATTG                                                                                                                                                                  
  |||||| ||||||||        |||||||| ||   ||||    ||   ||||                                                                                                                                                                  A
  TCCCAC CAAACCTT        CATTGACA CA   TTAA    CC   TCAT                                                                                                                                                                  
AT      A        --------        -  ---    TGAT  ATC    TAATGATCCCACCATTAATGTGTCACATCATTAATGTGATATAAAATTTTACGTTCCACACAAACCTATACTCCACCATTAATGTATACTTAAGGATTATAGAACAAACCATTTTATTAATTATTAATGTACCCTTTTATTATAAAAAATCATCGATTACAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End