SE4520016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3104
  • Cannabis sativa
  • SE4520016
  • Mutator
  • M7
  • scaffold27954:41071-41483
  • TATTTGCTA
  • GCTAGAGGAATGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTT  ---       A     ATTA         A           C                C    TC     -     ATA             -C        A  -A  A        AG              A                   C               A  A    C  A   CT   TATTCC     ACCACGCG
     GC   TAGAGGA TGCTA    CAACCTCCT TTACAACCTCT AGTCAACCTCCACGTC GAAA  ACATG CGGAA   TTTTTTTCAATTT  TTTTTCAT GC  GT TTCGTTAT  TTACAATATCATCC TGTAAATTTTTGAAAAATT CGAATAGTTTATAGT CT AAAA TG GTT  TGA      AGTTT        
     ||   ||||||| |||||    ||||||||| ||||||||||| |||||||||||||||| ||||  ||||| |||||   |||||||||||||  |||||||| ||  || ||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| || |||  |||      |||||         
     CG   ATCTCCT ACGAT    GTTGGAGGA AATGTTGGAGA TCAGTTGGAGGTGCGG CTTT  TGTAT GCCTT   AAAAAAAGTTAAA  AAAAAGTG CG  CA AAGCAATA  AATGTTGTAGTAGG ACATTTAGAAATTTTTTAA GCTTATCAAATGTCA GG TTTT AT CAA  ACT      TCAAA        
   AT  TTT       C     GGCA         C           A                A    TA     A     ATA             AA        -  CC  C        CG              G                   A               C  C    -  G   --   ------     AAACTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End