SE4520020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3108
  • Cannabis sativa
  • SE4520020
  • Mutator
  • M10
  • scaffold33435:496-697
  • TTTTTCGAC
  • TCGACGAGAAATGCTAAAGGGCACCAGTGGTGCCTAGCACCTTCCTATGTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTT    ---C   AAA     AA                         -CCT       AATATC  T      ACAACTA   ATCG G    ATAT    TAAT
    TCGA    GAG   TGCTA  GGGCACCAGTGGTGCCTAGCACCTT    ATGTGTC      GC ATTGGT       AGT    G TCCC    AATT    
    ||||    |||   |||||  |||||||||||||||||||||||||    |||||||      || ||||||       |||    | ||||    ||||    A
    AGCT    CTC   ACGAT  TCCGTGGTCACCACGGATCGTGGAA    TGCACAG      CG TAACCG       TCG    T AGGG    TTGA    
   C    TTTT   GTA     AA                         ACGC       -CGCAA  C      ------A   -CTA G    ATTT    TAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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