SE4520023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3111
  • Cannabis sativa
  • SE4520023
  • Mutator
  • M12
  • scaffold77930:46-444
  • TAAATATTT
  • AAATATTTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T           -AATA   T     A              -TATG   A   TA           A      C      A    A         C       TA        A     A          --------------                      -TTAT     T   CAAACAGTTCTCAATTATATGTAATCAAA
 AAATATTTGGG     TAC CATTT GTACCTTGTGTTTT     GAA ACA  TTTGGTACCTT TGTTTT AATAAT CTTA TTGGTACCT ATATTTT  AATTGTAC TATTT GTACCCTAAA              ATAAAATTTAATCAATACAGTT     TAATT AAC                             
 |||||||||||     ||| ||||| ||||||||||||||     ||| |||  ||||||||||| |||||| |||||| |||| ||||||||| |||||||  |||||||| ||||| ||||||||||              ||||||||||||||||||||||     ||||| |||                              
 TTTATAAATCC     ATG GTAAA CATGGGACACAAAA     TTT TGT  AAACCATGGAA ATAAAA TTATTA GAAT AACCATGGA TATAAAA  TTAGTATG ATAAA CATGGGATTT              TATTTTAAATTAGTTATGTTAG     AGATT TTA                             
            CACAG   T     C              TAGAA   A   TC           C      A      C    A         A       TG        C     C          AAATTAAAAAAAAC                      TTAAA     -   AAATACTTAAGATTTAAGTTTAAATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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