SE4550026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3114
  • Cannabis sativa
  • SE4550026
  • PIF/harbinger
  • To3
  • scaffold19218:5339-5640
  • TAA
  • AGGTGGCGTTTGGTTGGAGGTAATGAAATGGAATGGAATCGAAAGTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                 ---------------   T    -A       --      C    G    CAATTTT      ---- TTT  -   TT - GTTGCATTTTAAAGTATTGGAGTATCCTTCCAATGGAATGGCCTTTCCACTATTTTGGTAGAATGA
  AGGTGGCGTTTGGTTGG               AGG AATG  AATGGAA  TGGAAT GAAA TAAA       TATTCC    A   CT TTA  T G                                                                  
  |||||||||||||||||               ||| ||||  |||||||  |||||| |||| ||||       ||||||    |   || |||  | |                                                                  C
  TCCACCGCAAACCAACC               TCC TTAC  TTACCTT  ACCTTA CTTT ATTT       TTACGT    T   TT AAC  T T                                                                  
AA                 GTACTTATTTTTAAA   -    CC       TA      -    -    -AAAATT      ATTT ---  T   -- A TTTTTAATAATTAAAAAAAGTTTAGAACGTAACCTTACCAGAAAAGAAGGTAAAGTTTTACCTTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End