SE4520027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3115
  • Cannabis sativa
  • SE4520027
  • Mutator
  • M4
  • scaffold3270:52829-53243
  • TTTAAATTA
  • AGGCTAATTAGTAATTTTCCCCCCGAACTTTGACACGTACCAAATCATGCTCCCTGAACTTTTTAGGCCGTTAAAAATTCCCCCTGAACTATTGAGATTGTTAGATTTAAGGACTTTTGTCTAATTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAATT                  - C  CC   C       C    C     A                 A               C  CT                                            -GTAAAAAA    TAACATGGATGAAAGTTCAAGGGGCATGATTTAGTACATATCAAAGTTTGAGGGGCAT
        AGGCTAATTAGTAATTTT C CC  GAA TTTGACA GTAC AAATC TGCTCCCTGAACTTTTT GGCCGTTAAAAATTC CC  GAACTATTGAGATTGTTAGATTTAAGGACTTTTGTCTAATTTTA         ATTC                                                          
        |||||||||||||||||| | ||  ||| ||||||| |||| ||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||         ||||                                                           
        TCCGATTAATCATTAAAA G GG  CTT AAACTGT CATG TTTAG ACGAGGGATTTGAAAAA CCGGCAATTTTTAAG GG  CTTGATAACTCTAACAATTTAAATTCCTGAAAACAGATTAAAGT         TGAC                                                          
ATTAAATT                  A A  AA   A       A    A     C                 A               A  -T                                            AAGTTAAAA    AAAGTCACTAACAAATACATGATTTGGTACGAGGAATTTGAAATTATAGATGGTTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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