SE4520028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3116
  • Cannabis sativa
  • SE4520028
  • Mutator
  • M10
  • scaffold18730:12762-12963
  • ATTAAAAAA
  • GAGAAATGCTAAAGGGCATAAGTGGTGTCTAGCACATTCTTATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAAAAA   AAA     AA      A               A     ---    ATCAATATC   ATTAGTCCAACCAAGTATCGGGTCTCATATAATTTAAT
         GAG   TGCTA  GGGCAT AGTGGTGTCTAGCAC TTCTT   ATGT         GCT                                      
         |||   |||||  |||||| ||||||||||||||| |||||   ||||         |||                                       
         CTC   ACGAT  TCCGTA TCACCACGGATCGTG AAGAG   TACA         GCG                                      
AAAAAATTA   GTA     AA      G               A     CTG    ---------   CAACGCTAACCGATCACTATGAAAGATTTTCGATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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