Plant MITE

SE4550029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3117
Cannabis sativa
SE4550029
PIF/harbinger
To4
scaffold1545:206-685
TAA
ATGGCATGTTTACTAATAGGTAATGGGAATC

Secondary structure and sequence

TSD TIR

5'

3'

TA               ATA      G      --------------------------------AATA      TAATCATTCTCTTACATTTGTTTACTTGCATTATTAAAATTAGGAAAGGGAGAAGTTGATTAAATAAGGGAGAAAAGAAAGGGAGAACTTCTCCCACCAATTTTGTAAGGAATGCCATTAAGGGTAATGGATTTTTATTATTTTTATTTTATTTTTTAATACTAAATATATAATGACAATT
  ATGGCATGTTTACTA   GGTAAT GGAATC                                    GTAAGG                                                                                                                                                                                     
  |||||||||||||||   |||||| ||||||                                    ||||||                                                                                                                                                                                      
  TACCGTGCAAATGAT   TCATTA TCTTAG                                    TTTTTA                                                                                                                                                                                     
AA               ATG      G      CCTTATTTAATTACCTCATTACATTGCCTTATTTAC      TTAGCATTAGTTATAAACATTATACAACAAATGATTTTAAAAAATCTTTACCTTATCAACACTAAATAGAACAAATGAAATAATCCTTTGCATTAGCCTTACGAATTTAACTGATTTAACGGGAAAACTCAATTTGATATAATATACCATCAATAAAACGTTCTGTATAAAATTTCCTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4550029

TAATGGCATGTTTACTAATAGGTAATGGGAATCAATAGTAAGGTAATCATTCTCTTACATTTGTTTACTTGCATTATTAAAATTAGGAAAGGGAGAAGTTGATTAAATAAGGGAGAAAAGAAAGGGAGAACTTCTCCCACCAATTTTGTAAGGAATGCCATTAAGGGTAATGGATTTTTATTATTTTTATTTTATTTTTTAATACTAAATATATAATGACAATTTTGTCCTTTAAAATATGTCTTGCAAAATAACTACCATATAATATAGTTTAACTCAAAAGGGCAATTTAGTCAATTTAAGCATTCCGATTACGTTTCCTAATAAAGTAAACAAGATAAATCACAACTATTCCATTTCTAAAAAATTTTAGTAAACAACATATTACAAATATTGATTACGATTATTTTTCATTTATTCCGTTACATTACTCCATTAATTTATTCCGATTCTGATTACTGTATAGTAAACGTGCCATAA

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