SE4520030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3118
  • Cannabis sativa
  • SE4520030
  • Mutator
  • M2
  • scaffold23204:13141-13527
  • TAAATTTAA
  • TAAATTTAAGGGATATTTACGGTGAAACCCTTTTAATATTTGCAATTATTACATTTATGACCTTAATAAAAAAAGTAATGTCAAAAGTATTTTATTTTACGATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
         A                  CC             C    A      T               A      A  T                 AC      --------A    AGTC ---------  T  TTTTTTGGTTGTTAAGTAAGTGCCTATTAAGCCCGTTAAGTGTCAGCTCAGAAATACGTGACGATA
 TAAATTTA GGGATATTTACGGTGAAA  CTTTTAATATTTG AATT TTACAT TATGACCTTAATAAA AAAGTA TG CAAAAGTATTTTATTTT  GATTTT         TTAC    G         CA TC                                                                  
 |||||||| ||||||||||||||||||  ||||||||||||| |||| |||||| ||||||||||||||| |||||| || |||||||||||||||||  ||||||         ||||    |         || ||                                                                  T
 ATTTAAAT CCCTATAAATGCCGCTTT  GAGAATTGTAAAT TTAA AATGTG ATACTGGAATTATTT TTTCAT AT GTTTTCATGGAATAGAA  CTGAAA         CATG    G         GG TA                                                                  
A        -                  AA             A    C      T               C      C  C                 CA      CAACGCTAA    ---- TAAAAAACC  -  ATTCACAGTCGAGTCTTTGTTCACCGTTATATAATAATCTGGTGCATAATATATTCGATTTCTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End