SE4530031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3119
  • Cannabis sativa
  • SE4530031
  • hAT
  • Hat1
  • scaffold21598:1050-1615
  • CCTTCAAT
  • TAGGGGTGGGCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTTCAAT              ATCCAA      CCAATTGAACCGATCCAATCCAGTCCAATTAAAAAAAGTTGGATATTCAATTACAATTGGATGCTAAAAGTTAGATTTTAATTGGATTGGATCGGTTATTGGATGTCAATCTCAAAATCCAATTAAAAACCGATCCAATCCAATTACATTTATATATCAAAAAATTATTTATATAATAAAAAATAATGAAAAATACAATAATTGTTTTATTTATTTAAAAAATTTAGCTACAATAGACTTGTAAGAATAGTA
        TAGGGGTGGGCATC      TTCAAT                                                                                                                                                                                                                                                            
        ||||||||||||||      ||||||                                                                                                                                                                                                                                                             
        ATCCCCACCCGTAG      GCTAGG                                                                                                                                                                                                                                                            
TAACTTCC              ------      TTAGGTTGGAAAAAAAGGAGTAGGCTAGGTTAGGTTAATCATTAACCTAAACCTTTTACTAGTAGGCTAGGTTAGGTTAATCTGGAGTTTTAGGTTAGGTTAGATTAGGTTAATGATTAACCTAACCTAGCCAAAAAATTAACCTATAGGTTAATGTGTGGATTTAAAGTTATAATCGAATTTATATATTTCTTTTTATGTATTTTTTTTTGATTCATAATGAAAAATAAATTCAAATTATGAAATATTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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