Plant MITE

SE4520032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3120
Cannabis sativa
SE4520032
Mutator
M13
scaffold5162:1091-1293
TGTAAATAT
GAGCATTGTTATTGGGTATCAATAGTGTCTAGCACATTTTAC

Secondary structure and sequence

TSD TIR

5'

3'

TGTAAATAT   CAT     TT      CAA          CAC       ATAAG       T   GA   GTTA   GT    TTTTAAAAT    --T     AGT
         GAG   TGTTA  GGGTAT   TAGTGTCTAG   ATTTTAC     TGGTATT TAC  TTA    GTG  ATTA         TATT   TCTTA   
         |||   |||||  ||||||   ||||||||||   |||||||     ||||||| |||  |||    |||  ||||         ||||   |||||   T
         CTC   ACGAT  TCCATA   ATCACGGATT   TGGGATG     GCCGTAG ATG  GAT    CAC  TAAT         ATAA   AGAGT   
TATAAATAT   TTT     TT      ATG          --A       ----A       T   GC   -AAC   AT    -------TC    CTC     ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520032

TGTAAATATGAGCATTGTTATTGGGTATCAATAGTGTCTAGCACATTTTACATAAGTGGTATTTTACGATTAGTTAGTGGTATTATTTTAAAATTATTTTCTTAAGTTATATGAGACTCAATACTTAATTACACCAATAGCGGTATGATGCCGAGTAGGGTATTAGGCACTAGTAATACCTTTTAGCATTTCTCTATAAATAT

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