SE4550034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3122
  • Cannabis sativa
  • SE4550034
  • PIF/harbinger
  • To2
  • scaffold13996:19798-20199
  • TAA
  • AGAGCATCTCCAATGGTAGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   C   ------CTT    GATGCTCTATATCTCCACATCATCCAAAATATAATATTTTATTTTATTTTTCTTCCACATCATTTTTGGCATCTTTACTTTTAAAAACACTCCAATGGTATAATACCTTTTAAAAATGCTATAATTATGATATCACATATTATTATATATATATAAGTTTTTTTCT
  AGAGCATCTCCAATGGTAG ATT         TGAA                                                                                                                                                                      
  ||||||||||||||||||| |||         ||||                                                                                                                                                                       
  TCTCGTAGAGGTTACCATT TAA         CGAA                                                                                                                                                                      
AA                   A   AATCTCTTA    CTACTCCACCTTTCGAATACACCGTTTTATATCTCTACGATATGGTAATCTCTATTTTCTTACGGTAAGAACTTTAAACGTAACTATGGTGTGTTACTGTAACTACGATACAGAAAAAATATGTTATTTTTTAATTTTCACGTTATACATATATTATCAAATTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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