Plant MITE

SE4530035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3123
Cannabis sativa
SE4530035
hAT
Hat8
scaffold143783:1848-2092
GGTACCGA
GGTACCGACAGTGACGGACTCA

Secondary structure and sequence

TSD TIR

5'

3'

        GA   T          GGATT     ---TT     A    ---T     TT      AAATAT  ATAACTACGTTATAATCACTTTTATTAAATTTATCCAATTTTATGGAGACTTTTCTACTA
  GGTACC  CAG GACGGACTCA     TTTAC     TGTGG GGCT    ATTTA  ATAAAA      TT                                                            
  ||||||  ||| ||||||||||     |||||     ||||| ||||    |||||  ||||||      ||                                                             
  CCATGG  GTC CTGCCTGGGT     AAGTG     ACACC CCGA    AGAGG  TGATTG      TT                                                            
AG      --   C          -----     TAATT     C    TATC     --      ------  TTTATGACAAAAAATTTTTTAATTTACATTAAAAAAATTCAATTATTAATATTTGATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530035

GGTACCGACAGTGACGGACTCAGGATTTTTACTTTGTGGAGGCTTATTTATTATAAAAAAATATTTATAACTACGTTATAATCACTTTTATTAAATTTATCCAATTTTATGGAGACTTTTCTACTATTTTAGTTTATAATTATTAACTTAAAAAAATTACATTTAATTTTTTAAAAAACAGTATTTTTGTTAGTGGAGACTATAGCCCCCACATTAATGTGAATGGGTCCGTCCCTGGGTACCGA

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