SE4520039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3127
  • Cannabis sativa
  • SE4520039
  • Mutator
  • M3
  • scaffold80082:1824-2074
  • TATAATTAT
  • TATAATTATAGGGATACGATTTTGTCCTGTGATGTACTTTCACGGAATGTATTCCGTGATGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                          C         C                C    AT    -GA  A  G     ----------- G  - GAGTTATTAATTTGATCTGAGGGCTGAGATTGATCTAGA
TATAATTATAGGGATACGATTTTGTC TGTGATGTA TTTCACGGAATGTATT CGTG  GTAC   CA CC TTAGA           T GG G                                       
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||  ||||   || || |||||           | || |                                        
ATATTAATATCCCTGTGCTAAAACAG GCACTACAT AAAGTGTCTTACATAA GCAC  CATG   TC TA CTAGA           T CT C                                       
                          A         A                A    --    TAA  -  C     GACCCATGTAA -  A CCAGAGTCCCATGCAATGATAAAAAATTGGGATTAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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