SE4520047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3135
  • Cannabis sativa
  • SE4520047
  • Mutator
  • M3
  • scaffold8204:23375-23600
  • AATATATAT
  • ATATATATAGGGACACGATTTTGTCCCATGATGTACTTTCACGGAATGTATTATGTGATGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
A                           A                        A    AT    ----------GA     A ----   ATAGG   GTTATTTGCTCTGAGGGCTGGGGTT
 ATATATATAGGGACACGATTTTGTCCC TGATGTACTTTCACGGAATGTATT TGTG  GTAC            CAATC T    TAG     GGA                         
 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||            ||||| |    |||     |||                          
 TATATATATCCCTGTGCTAAAACAGGG ACTACATGAAAGTGCCTTACATAA ACAC  CATG            AGTCC C    AAT     TAA                         
A                           C                        G    --    TAATCTACTCAG     - ATGC   ---GA   AAAATTGAGATTAATGGGGATTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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