SE4550050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3138
  • Cannabis sativa
  • SE4550050
  • PIF/harbinger
  • To3
  • scaffold5067:21237-21561
  • TAA
  • AGGAGGCGTTTGGTTGGGAGGAATGAAAATGTAAGAATAGGAATGGGAATGGGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   A             G   -       A  TAA      G        T      ---------------G     GGGAATGGGAATGGAATAAAATTTAAAATGCATAAAAAAATTAATAAAAAAATCATTAATTTTTTTTTCTTGTTACATTGGAATGGTCATTCTT
  AGG GGCGTTTGGTTGG AGG AATGAAA TG   GAATAG AATGGGAA GGGAAT                GGAAT                                                                                              
  ||| ||||||||||||| ||| ||||||| ||   |||||| |||||||| ||||||                |||||                                                                                               
  TCC CCGCAAACCAACC TCC TTACTTT AC   CTTATC TTACCTTT CCTTTG                GAAAT                                                                                              
AA   A             -   A       -  ---      -        -      TTAAAAGTAAAGTAAA     AAACCAACGTAAAATTTCATAACCTTACTGTAAGGTTACCTTGCGAGAAAAGTGGTAAAATCACCTTACTGATAAGGTAAAAATCTTTTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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