SE4530053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3141
  • Cannabis sativa
  • SE4530053
  • hAT
  • Hat6
  • scaffold46892:4943-5417
  • ATATGCAG
  • TGCAGTAGGGGTGGCAA

Secondary structure and sequence

TSD    TIR
5'



3'
ATA    --G     G      TT               A --    T TCGT  -    ACC      TAACAGGTACATGCTCGACCCGAACACGACCTGTTTAACAATCGTGTCAAAAAAAGAAAACCCGAACACGATCTGTTTATAAACGGGTTAACACGACACGACCCGTGTAACCCGTTTATAAGTATATTTTGTTTAAACATGTCAATCAATAACACGTTTATGAAGTGTTCAACACGT
   TGCA   TAGGG TGGCAA  CGTGTTGGCAGGTCG G  TTCG G    GT CGAG   CATGTA                                                                                                                                                                                 
   ||||   ||||| ||||||  ||||||||||||||| |  |||| |    || ||||   ||||||                                                                                                                                                                                 T
   ACGT   ATCCC GCCGTT  TTGCCCGGTCTGTGC T  TGTG C    TG GCTT   TGGGCG                                                                                                                                                                                 
  G    ATA     G      --               - AC    - ----  A    ---      TGCTCTCAATCGCCCAAACCCAAACGGAATTTACCCAAGCCCAGTACAAGCCCAACTGAGCAGATTGGGCAAATTATTTACCTAGCACAAGCCCAACTGTGCCGATTGTGCTTTAACTGGACAATTACTGAATAAATTTCAATAAAATCATGAAATTGCACAGTATTTACCCAATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End