SE4520054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3142
  • Cannabis sativa
  • SE4520054
  • Mutator
  • M9
  • scaffold52263:13699-14088
  • TAAAATTAA
  • AGAGTAATTTGTGGCATAAATACTTAAGTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATTA                                 CTCCCA       T                                    C  T      A  C     CCTCTA       ATAG                ----------A     --  ACATGGTAATTCCTGATTGGTCCAAATTGTTAACTTTT
        AGAGTAATTTGTGGCATAAATACTTAAGTTTAA      GTTGTAA TAAATATCTAAGTTTAATTTTTGGCGGTAATAATAC TA GTTATA TT TGAAA      TAGGTAC    TTGTTAAGTGTTAAGT           AATTA  CC                                      
        |||||||||||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||||||| || |||||| || |||||      |||||||    ||||||||||||||||           |||||  ||                                      T
        TCTCATTAAACGCTGTATTTATGGATTCAAATT      CAATGTT ATTTATGGATTCAAATTAAAAATCGCCATTATTATG AT CAATAT AA ACTTT      ATTCATG    GGCAATTTATAATTCA           ACAGT  AA                                      
AATTAAAA                                 AAAAAC       T                                    A  T      A  A     -TAAAC       AACT                GTAATAGATCC     AA  GAATAAGCATATAAATTTGATTAAAAAAATTTTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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