Plant MITE

SE4520057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3145
Cannabis sativa
SE4520057
Mutator
M5
scaffold67497:9575-9882
TTATTTAAA
AAGGGAAATTTACA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTA              TGGT     AACT    -TCATT                 - -  G TAGT       A TTTTT            T  -----TA   --TT    CT    -TAT   ---GTGTTA   -TTT        TTCT  TG
       AAGGGAAATTTACA    ATACT    TTTG      TTTTTACAAAAATACTG C CA G    AGTTTTT C     TACTGTGTTTTT TA       AGT    CATA  GCAG    ACT         AGT    CACTGGTG    AC  
       ||||||||||||||    |||||    ||||      ||||||||||||||||| | || |    ||||||| |     |||||||||||| ||       |||    ||||  ||||    |||         |||    ||||||||    ||   
       TTCCCTTTAAATGT    TATGA    AAAC      GAAAATGTTTTTATGAC G GT C    TTAAAAA G     ATGACACAAAAA AT       TCA    GTGT  CGTC    TGA         TCA    GTGATCAT    TG  
AAATTTA              -TTT     CCTT    CCAATT                 A T  G --CT       A TTTTT            T  TTTGTGG   TTTT    TT    TTGT   GTTTTGTTG   TCTT        --TT  TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520057

TTATTTAAAGGGAAATTTACATGGTATACTAACTTTTGTCATTTTTTTACAAAAATACTGCCAGGTAGTAGTTTTTACTTTTTTACTGTGTTTTTTTATAAGTTTCATACTGCAGTATACTGTGTTAAGTTTTCACTGGTGTTCTACTGGTGTTTTACTAGTGTTCTACTGTTGTTTTGAGTTGTTCTGCTTTGTGTTTTACTGGTGTTTTATAAAAACACAGTATTTTTGAAAAAATTTCCGTGTGACAGTATTTTTGTAAAAGTTAACCCAAATTCCAGTATTTTTGTAAATTTCCCTTATTTAAA

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