SE4520058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3146
  • Cannabis sativa
  • SE4520058
  • Mutator
  • M18
  • scaffold153456:826-1104
  • TTTTGAATA
  • TTTGAATAGGGGTAAGTTG

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T     T      --AAAA      C      -TAA  AATTAATCAAA  TA     AA     -TA      TGAAACA           ATAT          -CAAAATA    AACATAAGAGA    CA G    G
  TTTGAA AGGGG AAGTTG      ATACCC TTTTAT    TC           TT  CCTCT  TTTTA   TTTATT       TACCTCTTTTT    GTATTGTACC        CCCT           GTCA  T GAGA 
  |||||| ||||| ||||||      |||||| ||||||    ||           ||  |||||  |||||   ||||||       |||||||||||    ||||||||||        ||||           ||||  | |||| T
  AAGTTT TCTCC TTTAAT      TATGGG AAAATA    AG           AA  GGAGA  AAAAT   AGATAG       ATGGAGAAAAA    TATAACATGG        GGGA           CAGT  A TTCT 
AT      -     -      GTGAGA      A      TAAC  GAGAAAATAAA  TG     -A     TTC      --TAAAA           ATTT          TTAAAACG    -----------    AA G    A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End