SE4520059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3147
  • Cannabis sativa
  • SE4520059
  • Mutator
  • M20
  • scaffold96423:276-619
  • TATTTTAAA
  • AGGGTTAATTACACAAATGCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTAA    T        CA       ---AAA       AAAAAACGGTTTTACGGAATTTTAAACATTTTTACGATTTTTTTGATTTTATTTACATAAAATACGGTCTTTTTATGTTGAAATTTTGTTCATTTGTTGTTAATTTTTTGTTATATGTATGTTATTTTTTG
        AGGG TAATTACA  AATGCAC      AACAATA                                                                                                                                   
        |||| ||||||||  |||||||      |||||||                                                                                                                                    
        TCCT ATTAATGT  TTACGTG      AACATTT                                                                                                                                   
AAATTTTA    T        -A       ATAAAA       TATAAATGTTAAAATGCAAGTTTCTTATAAAAAAATATAAAAATGCCAAAAGATTTTTTATTGTGCTTTTGTTGTATTTTAGTTGTTCTTTTGTTGTATTTTCATTGTACTTTTATTGTAGTTTTATTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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