SE4530063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3151
  • Cannabis sativa
  • SE4530063
  • hAT
  • Hat4
  • scaffold4423:14562-14857
  • GTCTCTCG
  • CAGGGCCGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTCTCG            -----------       ---------------A   GGGCTAGGCCCGTGCCTAGGGCCCACACTTTCCGGGGGCCCAAAATAAAAAAATAAAAAAAAAATTATTAGGCTTTTATTTAAGTAAAATTTAAGTGTAATATA
        CAGGGCCGGCCC           TAGGCAT                GGC                                                                                                        
        ||||||||||||           |||||||                |||                                                                                                         
        GTCCCGGCCGGG           CCCGGGT                CCC                                                                                                        
GCTCTCTG            ACTTTTAAATA       TCTGCTTAATTTAAAA   CGGGATTTTTTATATAGTTTTTTTCTCACAGTACCCTAAACTTGGGTACTAGAACCTGTAATACAGGAGGTGAAGTTGGTTGATTCGATATTTATAAACAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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