Plant MITE

SE4520064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3152
Cannabis sativa
SE4520064
Mutator
M13
scaffold20480:15429-15628
GTTCAAAAA
GAGAATTGCTAAAGGGCACTACTGGTGCCTAGCACCCTCCTTAGTGACATACCGCTATTGGT

Secondary structure and sequence

TSD TIR

5'

3'

GTTCAAAAA   A       AA        C              C   T   -  A   A  -GC       GTAATTAAA    --A      ATATAACTTAAG
         GAG ATTGCTA  GGGCACTA TGGTGCCTAGCACC TCC TAG TG CAT CC   TATTGGT         TAGC   GTTCTC            
         ||| |||||||  |||||||| |||||||||||||| ||| ||| || ||| ||   |||||||         ||||   ||||||             
         CTC TAACGAT  CCCGTGGT ACCACGGGTCGTGG AGG ATC AC GTG GG   ATAATCA         ATCG   TAAGAG            
AAAAACTTG   G       AA        C              A   T   C  A   -  ATA       ---------    CTA      ATTTAAATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520064

GTTCAAAAAGAGAATTGCTAAAGGGCACTACTGGTGCCTAGCACCCTCCTTAGTGACATACCGCTATTGGTGTAATTAAATAGCAGTTCTCATATAACTTAAGAAAATAAATTTAGAGAATATCGCTAACTAATAATAGGGTGACACCTATGGAAGGTGCTGGGCACCACTGGTGCCCAATAGCAATGCTCGTTCAAAAA

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