SE4530065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3153
  • Cannabis sativa
  • SE4530065
  • hAT
  • Hat10
  • scaffold106885:686-1068
  • ACTACTTC
  • CAGTGGCGGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTACTTC  GT          TAATTGAATTTTAGGGTAGACTTAGTTATACATTCAATATAATCTAAAACAATAAATAACTAGCTAAATTTAAGTAGAATGATAATTTAGCAGCATACTCCTATTCTAATGGTCATAAGTTCGATCTTAGTTTAAACTTTATACTTCATTTGGTTTTTTTAATAAATAA
        CA  GGCGGACCCA                                                                                                                                                                         
        ||  ||||||||||                                                                                                                                                                         A
        GT  CCGCCTGGAT                                                                                                                                                                         
CTTCATCA  AT          TCCCACAACTCCCTTCGGGTGGGAGTCTAAATTTTTATATAATTATATGTTAACAATGAAAGTATATATGTATCATCAATTTATCTTGTTAATCAATTTTACGAAATTTAAATGTACCCTGTGATACAAGACTTAAAGGAACGAGGAAAAAAAGATGCACATAGATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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