Plant MITE

SE4530066

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3154
Cannabis sativa
SE4530066
hAT
Hat8
scaffold34324:54172-54417
ATTAAGAC
CAGTGACGGACCCA

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAGAC   T          GAATTTTTACTT   A      -TATTTAT          T  TTATA   ATATTATAATTA       T  ATTTATTTAATTTTGTGGGGGCTTTTTCTACTATT
        CAG GACGGACCCA            TGT GGGGCT        CATTAACAAA AT     CCT            CTCTTAC AG                                   
        ||| ||||||||||            ||| ||||||        |||||||||| ||     |||            ||||||| ||                                    
        GTC CTGCCTGGGT            ACA CCCCGA        GTGATTGTTT TA     GGA            TTTTTTA AT                                   
CAGAATTA   C          --GAAACTAACT   C      TATTGGGC          T  -TGAC   ---------AAA       -  TTACATTAAAAAAATTAAAACATTAATATCTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530066

ATTAAGACCAGTGACGGACCCAGAATTTTTACTTTGTAGGGGCTTATTTATCATTAACAAATATTTATACCTATATTATAATTACTCTTACTAGATTTATTTAATTTTGTGGGGGCTTTTTCTACTATTTTAATCTATAATTACAAAATTAAAAAAATTACATTTAATTTTTTAAAAGGCAGTATTTTTGTTAGTGCGGGTTATAGCCCCCACATCAATCAAAGTGGGTCCGTCCCTGATTAAGAC

Copy Cancel