Plant MITE

SE4520068

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3156
Cannabis sativa
SE4520068
Mutator
M21
scaffold111241:6532-6820
AAGATATTA
GATATTAGGGATTTTTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

AA      -A    TT      A AATA    AAATTAAGTAACTTTTTACAAAAATGACGTTTTTTTTTAAAATGAAAACAAAATGACGTGACACGTACAAAGAGTGTGTGTTTTAAAAAATTGGGCCGAAAAACCGGGATTACAA
  GATATT  GGGA  TTTTTA G    TACT                                                                                                                   
  ||||||  ||||  |||||| |    ||||                                                                                                                    
  TTATAG  CCCT  AAAAGT C    CGGT                                                                                                                   
 A      AA    TT      A ---C    GGAATAAAACCGTTAATAAAAGTTTTTACTGCAATAAAAACAATACAATTCAAAAGCATATACATCAACTGCAAAAATACCATTAAAAGATAAAAATTGCTAAACATATAACCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520068

AAGATATTAGGGATTTTTTTAAGAATATACTAAATTAAGTAACTTTTTACAAAAATGACGTTTTTTTTTAAAATGAAAACAAAATGACGTGACACGTACAAAGAGTGTGTGTTTTAAAAAATTGGGCCGAAAAACCGGGATTACAAGCCCAATATACAAATCGTTAAAAATAGAAAATTACCATAAAAACGTCAACTACATATACGAAAACTTAACATAACAAAAATAACGTCATTTTTGAAAATAATTGCCAAAATAAGGTGGCCCATGAAAATTTCCCAAGATATTA

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