Plant MITE

SE4520069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3157
Cannabis sativa
SE4520069
Mutator
M16
scaffold112729:1060-1392
AAAGGGAAA
A

Secondary structure and sequence

TSD TIR

5'

3'

                       AA     -  TTT    --------  CTATACTTAGAAAATCTTAAATTTTTTTCCCTAAATACATACTTAATAATATTGGTCATATATGACCACATTCTTAATATCCCACAAATACCCCTCCCATTTGAAAAAAAATCAAAAACTCAAATCATCCATCC
                         AGGGA AA   GATT        TT                                                                                                                                      
                         ||||| ||   ||||        ||                                                                                                                                       
                         CCGAC CA   GGCT        CG                                                                                                                                      
AAACTCTCTCTCCTTCTCTCTCTCC     C  ---    CTCTTCCC  ACCCAGCACGCACCAAGCCTGCCACCAGCACGCATCAGCCCCACCACCCATCAGGAGCCACCGGCCCGCACCACCAGCCCGCGACTTCGGTACCAGTCGCTCTCCCTCTCTCTCCAAGTCCTACTCCGTCGGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520069

AAAGGGAAATTTGATTTTCTATACTTAGAAAATCTTAAATTTTTTTCCCTAAATACATACTTAATAATATTGGTCATATATGACCACATTCTTAATATCCCACAAATACCCCTCCCATTTGAAAAAAAATCAAAAACTCAAATCATCCATCCATGGCTGCCTCATCCTGAACCTCTCTCTCCCTCTCGCTGACCATGGCTTCAGCGCCCGACCACCACGCCCGGCCACCGAGGACTACCCACCACCCCGACTACGCACGACCACCGTCCGAACCACGCACGACCCAGCCCCTTCTCTCGGACCCAGCCCCTCTCTCTCTTCCTCTCTCTCAAA

Copy Cancel