SE4520070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3158
  • Cannabis sativa
  • SE4520070
  • Mutator
  • M10
  • scaffold115764:4377-4578
  • TTTTTTAAA
  • AAAGAGCATTGCTATTGGGCACCAGTGGTGCCTAGCACCTTTTAGATGTGTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT      CAT     TT      CAG         G        AG         -  T  AATTAGTTAGCGATACTCCATAAAAATTATTATATT
      AAAGAG   TGCTA  GGGCAC   TGGTGCCTA CACCTTTT  ATGTGTCGA CT AC                                    
      ||||||   |||||  ||||||   ||||||||| ||||||||  ||||||||| || ||                                    A
      TTTCTC   ACGAT  CCCGTG   ACCACGGAT GTGGGAGG  TGCACAGTT TA GC                                    
AAATTT      TTT     TT      ATA         G        -A         A  -  GATAACCACGTTAATTCATAGCCCAGGGTATATCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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