SE4530072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3160
  • Cannabis sativa
  • SE4530072
  • hAT
  • Hat4
  • scaffold51716:32076-32287
  • ATTGGGTT
  • GGTTCAGGGCCGGCCCTGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
 ATTG   T                 TAAAAT     A   GAAAAAAAAAAATTTTAGGCCCTTACTATAAAGATAAATAGTATTTTTAAAAATTATTAAAAAAAATA
     GGT CAGGGCCGGCCCTGAGT      GGGCT TAG                                                                    
     ||| |||||||||||||||||      ||||| |||                                                                    T
     TCA GTCCCGGCCGGGATTCG      TCCGC CCG                                                                    
TTGGA   -                 ----TA     -   ATCCGGGCGCGGATCCCGGGTGAGTAAAATCCCCGGGTTTAATTTTTTGACGGAAAATTTTTTATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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