SE4520073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3161
  • Cannabis sativa
  • SE4520073
  • Mutator
  • M22
  • scaffold135393:67-364
  • TTGATTTAG
  • GATTTAGGAGTTTTTACAAAAATATTGAATTTTTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    T             -AAA        -        AAAAG     -AA         CACAC           A        C   ---CT       ---------------AAACAA    AAAACAACAAAATAGAACAATTAAAATAACA
  GATT AGGAGTTTTTACA    ATATTGAA TTTTTGAT     TTTAC   TTTTACTAT     GGAATTTTTTT CAAAAATA TGT     TTTTATA                     TCAT                               
  |||| |||||||||||||    |||||||| ||||||||     |||||   |||||||||     ||||||||||| |||||||| |||     |||||||                     ||||                               A
  TTAG TCCTCAAAAATGT    TATAACTT AAAAATTA     AAATG   AAAATGATA     TCTTAAAAAGA GTTTTTAT ACA     AAAATAT                     GTGC                               
AT    T             GGTG        T        -AAAA     AAA         CCCCA           -        A   CATTT       GACACATGAAACAATTAAAAA    CAACAAGGTACCAACAAAAAATCAACAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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