SE4530075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3163
  • Cannabis sativa
  • SE4530075
  • hAT
  • Hat11
  • scaffold12005:39753-40132
  • CTATTTTG
  • GCAGGGTCGGTCCTAAGGTATATGGGGCTTAAGGCG

Secondary structure and sequence

TSD    TIR
5'



3'
CTATTTT              A   TA  T G    TA     AAATCAAAATT  G G   CT       -  TTAACTATTATAAAAATTATAGCTCAAGTACTTAGTTTAATGGTAAAGCTTTTAAAAACTTTGAGATCTAAGGTTCAATTCCTCATAACTACACATTAAATATTTTTTAAAAAGATTAAAATGT
       GCAGGGTCGGTCCT AGG  TA G GGCT  AGGCG           TG G CTC  ATATATA GA                                                                                                                            
       |||||||||||||| |||  || | ||||  |||||           || | |||  ||||||| ||                                                                                                                            A
       CGTCCCGGCCGGGA TCC  AT C TCGA  TCCGT           AC C GAG  TCCGGGG CT                                                                                                                            
GTTTTAT              C   -C  C G    --     -----------  G G   --       G  TGCGAGTCCCGGAGCTTTAACACTTTTTTTTATATAATTATATATCTATTCTAAAATTTATTCTTGTTTAATATTATTTTTAACAAACCACAACACCGTTTTACGAATTGAAGAGAGATTGGAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End