Plant MITE

SE4530077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3165
Cannabis sativa
SE4530077
hAT
Hat12
scaffold84874:457-874
CATATACG
TATACGCAGGGACG

Secondary structure and sequence

TSD TIR

5'

3'

CA    C    G         ACTTTAGCCCATGTGTGGGCTAAAGCCCTCACTCAAATATATACATTAAATTTTTTATATGTAGATATATACATATATTAATTCACTTTGTTCAATTTATTAAAGTCCAATTCACAAAAGCCCTCACTCAATATCTTAATCATGATTCATGAGCCTACTCTTATTCTAATCAAGCCCATTTTAAAAGT
  TATA GCAG GACGGAGGG                                                                                                                                                                                            
  |||| |||| |||||||||                                                                                                                                                                                             
  ATAT CGTC CTGCTTCGG                                                                                                                                                                                            
GC    A    A         TCTTTAAATCAACTCACTCCCGAACTATAATTCAGTTTTGATTATTTTTATTACTATTTACATAGAAAGTTTAAAAGTAGAAGTTGTTTTATTTTATTATGACAACTGTTTTTATTTTATTTTATAACAGTTACCATAATAAAATAAAAAATTATTTCATAATAAAAAAAATAATAAACATAACCTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530077

CATATACGCAGGGACGGAGGGACTTTAGCCCATGTGTGGGCTAAAGCCCTCACTCAAATATATACATTAAATTTTTTATATGTAGATATATACATATATTAATTCACTTTGTTCAATTTATTAAAGTCCAATTCACAAAAGCCCTCACTCAATATCTTAATCATGATTCATGAGCCTACTCTTATTCTAATCAAGCCCATTTTAAAAGTAGTCCAATACAAATAATAAAAAAAATAATACTTTATTAAAAAATAAAATAATACCATTGACAATATTTTATTTTATTTTTGTCAACAGTATTATTTTATTTTGTTGAAGATGAAAATTTGAAAGATACATTTATCATTATTTTTATTAGTTTTGACTTAATATCAAGCCCTCACTCAACTAAATTTCTGGCTTCGTCACTGCATATACG

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