SE4530078

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3166
  • Cannabis sativa
  • SE4530078
  • hAT
  • Hat13
  • scaffold13234:108-670
  • GTGCGAGC
  • GTGCGAGCTAGGGCTGAGCAT

Secondary structure and sequence

TSD    TIR
5'



3'
  G  A       C       -C         -  TCG -     TCTATATAAAAATCCAAAATTCGGTTTTCGGTATGGATTGGTGCAATCCGAAAACCGACCGACCAATCTAGAACATATCTTAAAACTGACCGTTTTGAACCTCGATTTGGTCGGTTTAAACCGCCCAAACCGAACTTTTAAGAAAAAAATGATCCAATTTATTCTATAAATACATTATTTTATATTTTACAACTATAAACATACAAATTAATTGTTCAAAAACTAATTATCTTATTCTT
GT CG GCTAGGG TGAGCAT  GGTCGGTTT GG   G TTTTT                                                                                                                                                                                                                                               
|| || ||||||| |||||||  ||||||||| ||   | |||||                                                                                                                                                                                                                                               T
CG GC TGATCCC ACTCGTA  TTAGGTCTT TG   G TTTTT                                                                                                                                                                                                                                               
  A  G       C       TT         T  --- C     TGACAAGTTTTGCTGGATGACTTGTGGCAACCTTGGCTTTGGCTGCTTTGGCTTTTGGCTTTTTTGGCGATTGCCACTTTTGACGGTAACTTACCAGCAAAAAAAAAAACCATTATTTGGCTGGCTTTTTTGGCTTTGGCTGGCAATATGTATATATAATTAATTAAAAAAAATGTACATAATATCAATGATTATTATATATTATTATTATATAATAATAAAATAATTATAATTTCAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End