SE4540079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3167
  • Cannabis sativa
  • SE4540079
  • CACTA
  • Ca3
  • scaffold16869:67297-67709
  • TTA
  • CTATGTTTGGTAGGAGGAAAAGATGGGTGGATGGAGAGCGATAGAGGGAGAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTACA           A    -  -AA   --TG             CGA     -   ----     A  GA     -   CTAACTTACTTGTTTGACAAGAGGGAGAGGAGAGATAGAGGGATACATTCTCCGTTCAAACATTTAAAATTCAATCTCTCCAAATTTGGGAGGATTGTAGAAAAAGACAATATACATTTTACAAAATGCAA
     CTATGTTTGGT GGAG GA   AGA    GGTGGATGGAGAG   TAGAG GGA    GAGTG TG  AGGCG AGT                                                                                                                                   
     ||||||||||| |||| ||   |||    |||||||||||||   ||||| |||    ||||| ||  ||||| |||                                                                                                                                   T
     GATACAAACCA CCTC CT   TCT    CTACCTACCTCTC   ATCTC CCT    CTCAT TC  TCCCT CCT                                                                                                                                   
ATTCC           C    T  CCC   CATA             -AA     T   ACCC     -  --     A   CTACTAACAATTAGAGGAAATATAACAAACCATAATCCACACTCCACTCTTCATAACTCTTTTTTAACTAATCATTTTAATGTTTTAACAGTAAAATTTTTATTTTAAAATAATAAAAAAATATCTATTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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