SE4530083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3171
  • Cannabis sativa
  • SE4530083
  • hAT
  • Hat4
  • scaffold35532:32-240
  • ACCCTAAG
  • CAGGCCCGGCCCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCCTAAG    C         -----------   -      GGGGTAGGCCTGTGCCTAGGGCCCACCCAGTCTAGGGGCCCAAATTTTTTTTTCTTCTTTTAAAATT
        CAGG CCGGCCCTG           GGC ATAGGC                                                                   
        |||| |||||||||           ||| ||||||                                                                   A
        GTCC GGCCGGGAC           CAG ATCCCT                                                                   
GAATCCCA    C         TTTGTTTCACC   T      TTTTAAAAAAAAACCCGGAAATACAATCTTTTTTACACCATAAAAAGTTTTAGCCATTTTTTTACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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