SE4520085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3173
  • Cannabis sativa
  • SE4520085
  • Mutator
  • M23
  • scaffold13191:2648-3120
  • ATCCTAAAG
  • GGGAAATTTGATTTTTTATGCTTACGTTTGGTTAAAATTTTTTTTCTAAACAAATAATAACTA

Secondary structure and sequence

TSD    TIR
5'



3'
ATCCTAAA                           T  G    A     T         A    ---ATA    ATAT   T   -       A     TATGATAT   T           A    CA     CCATTTACACCATCAGACCACCCATCA   --- A CCCATCGGGCCACCCATCGGACGACCCATCGGGCCACCCATCGGACCAGATTTGCTACCAATTTTTTTTTATGTTTTTGTACATACA
        GGGAAATTTGATTTTTTATGCTTACGT TG TTAA ATTTT TTTCTAAAC AATA      ACTA    TTG AAA ATATGAC ATTTT        TCC AAAATACCCCT TTTA  TCACC                           GGC   C C                                                                                       
        ||||||||||||||||||||||||||| || |||| ||||| ||||||||| ||||      ||||    ||| ||| ||||||| |||||        ||| ||||||||||| ||||  |||||                           |||   | |                                                                                       A
        CCCTTTAAACTAAAAGATATGAATGTA AT GATT TAAAA AAAGATTTG TTAT      TGGT    AAC TTT TATACTG TGAAA        GGG TTTTATGGGGA GAGT  TTAAA                           AGA   G A                                                                                       
AAATCCTA                           T  G    A     T         A    GTATAG    ----   T   A       A     TAGATTTT   T           -    --     ---------------------------   TAT - AAAAAAATCACATTTTTGTATTTTTTCTTTTTTTTAACCATCAGGCTACCCCAGGCTACCACCAGGCTATCAGTGGACTACGATGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End