SE4520087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3175
  • Cannabis sativa
  • SE4520087
  • Mutator
  • M10
  • scaffold140016:634-835
  • TAAAAAAAT
  • GAGCATTGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAAAT   CAT     TTGG C            T         AAG        -CC    G     -    --------  ATAC    TAAAAGCTATTA
         GAG   TGCTA    G ACCAGTGGTGCC AGCACCCTT   ACGTGTCG   TTGC ATTGG CTAG        CG    TCCC            
         |||   |||||    | |||||||||||| |||||||||   ||||||||   |||| ||||| ||||        ||    ||||            T
         CTC   ACGAT    C TGGTCACCACGG TCGTGGGAG   TGCACAGT   AGCG TAACC GATT        GC    AGGG            
TAAAAAAAT   TTT     TTTA A            T         -GA        TAT    A     A    AAATCATA  --CC    TATATCAAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End