SE4530088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3176
  • Cannabis sativa
  • SE4530088
  • hAT
  • Hat16
  • scaffold7941:18658-19192
  • TGAAAAAT
  • TAGGGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TGAAAAAT        ---TAAAC     GGGACGGGTGCGGGGATTCCTCCCCCACCCCCATACCCGTTTATTAAATTCACCCCCATACCTGCCCCAATACCCATTTAAATTAAAGCGGGGGCGGGACGGGGATTACCTGTGGGGGAAGGATTTCTATCGGGTACCCATTACATATATATTTTTGAAAAAAAATGATGTTTCAAAGAGAATTAAAAAAATAATCATAAAAACTTAGTAAAATAATAAACTTAAGTTGAATAGTGTGTA
        TAGGGATG        GGGGC                                                                                                                                                                                                                                                
        ||||||||        |||||                                                                                                                                                                                                                                                 
        ATCCCTAC        TGGGC                                                                                                                                                                                                                                                
CAAAAAGT        CGTTAATA     GCCCAAGCCCATGGGCATCCATGGGCGGGGATTACCCCGTCCATGCCCCCAACTGAAAGTCCCCGCCCCCGCCCATACCCAAATTTGTAAGTATGGACTCAGCTTTTGTTCCGCCCCGCCCCCTTATCTATGGGCGGGGCTATACTATATACATGTATAAATTCAAAATTTTAGTATTGATGATGTTAATTTTATTGAAGTACGAAATCCGAAAAATAACTAATATGAGAAAAAAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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