Plant MITE

SE4520092

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3180
Cannabis sativa
SE4520092
Mutator
M24
scaffold4504:69775-70000
GGAGTAAAG
GAATCAAGATCTTCGGTTAAAAAATTGTGTTTCATAGTGTATTAAATCAATTT

Secondary structure and sequence

TSD TIR

5'

3'

GGAGTAAAG             CG     A         T         A      C     TATTG                  GAC     -        AAAAAAAA  GT
         GAATCAAGATCTT  GTTAA AAATTGTGT TCATAGTGT TTAAAT AATTT     TGACACGTCAATTAATTT   CATTT TTAAAAAA        CT  
         |||||||||||||  ||||| ||||||||| ||||||||| |||||| |||||     ||||||||||||||||||   ||||| ||||||||        ||   
         CTTAGTTCTAGAG  CAATT TTTAACACA AGTATTACA AATTTG TTAAA     ACTGTGCAGTTGATTAAA   GTAAA AATTTTTT        GA  
GAAATGAGG             TA     A         C         C      A     TTCAA                  -AA     T        AGTTAATA  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4520092

GGAGTAAAGGAATCAAGATCTTCGGTTAAAAAATTGTGTTTCATAGTGTATTAAATCAATTTTATTGTGACACGTCAATTAATTTGACCATTTTTAAAAAAAAAAAAAACTGTATAGATAATTGATTTTTTAATAAATGAAAAATTAGTTGACGTGTCAAACTTAAATTAGTTTAACACATTATGACACACAATTTATTAACATGAGATCTTGATTCGGAGTAAAG

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