Plant MITE

SE4550093

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3181
Cannabis sativa
SE4550093
PIF/harbinger
To3
scaffold6740:875-1212
TAA
AGGAGGCGTTTGGTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TA   A             GATGAATAAAAATATAGGAAT   -       ATA       G    A   T    -------------   GGAATAAGAATGGAATGGAATAAAATTTAAAATGCATAAAAAAAATTGATAAAAAAATCATTAAATTTTTTTTCTTGTTACATTGGAATGGTCATTTT
  AGG GGCGTTTGGTTGG                     AGG AATGAGA   GGAATAG AATG GAA AGGA             ATA                                                                                                  
  ||| |||||||||||||                     ||| |||||||   ||||||| |||| ||| ||||             |||                                                                                                   
  TCC CCGCAAACCAACC                     TCC TTACTTT   CCTTATC TTAC CTT TCCT             GGT                                                                                                  
AA   A             ---------------------   A       --A       -    -   -    TTGTTAAAAGTAA   AAAGAAACAAACCAACGTAAAATTTCATAATCTTACCGTAAGGTTACCTTACGAGAAAGGTGGTAAAACCACCTTACCGATAAGGTAAAATTTTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4550093

TAAGGAGGCGTTTGGTTGGGATGAATAAAAATATAGGAATAGGAATGAGAATAGGAATAGGAATGAGAATAGGAATAGGAATAAGAATGGAATGGAATAAAATTTAAAATGCATAAAAAAAATTGATAAAAAAATCATTAAATTTTTTTTCTTGTTACATTGGAATGGTCATTTTTTCTTTTTAAAATGGAATAGCCATTCCACCAAAATGGTGGAAAGAGCATTCCATTGGAATGCCATTCTAATACTTTAAAATGCAACCAAACAAAGAAATGGAATGAAAATTGTTTCCTTTCCATTCTATTCCATTTCATTACCTCCAACCAAACGCCACCTAA

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