SE4520095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3183
  • Cannabis sativa
  • SE4520095
  • Mutator
  • M12
  • scaffold72734:1056-1457
  • TTTTATGTA
  • TATGTAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT    -T    AATA   T     A             -TTAT     AA    TTAGTATCATATGTTTTCAATAATACTTAATTGGTATCTCATATTTTCAAATTGTACATAGTTGGTATCCTAAAATAAATTTTAATTAATACAGTTTTATCAATTTAACCAAACAGTTCTCAATTATATGTAATCAAATAAATAAAT
   TATG  AGGG    TAC CATTT GTGCTTTGTGTTT     GAAAA  ATAT                                                                                                                                                   
   ||||  ||||    ||| ||||| |||||||||||||     |||||  ||||                                                                                                                                                   T
   GTAT  TCCC    ATG GTAAA CATGGGACATAAA     TTTAT  GTTC                                                                                                                                                   
 AT    TT    ACAG   T     C             TTAGA     --    AAACCATGGGACATAAAAATTATTACAAATAAACCATGGTACATAAAATTTTCGTATGGATAAATCATAGGATTTAAATTTAAAAAAACTATTTTAAATCAGTTATATATGATAGTTATCAGATTTTCAAATACTTAAGACTTAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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