SE4520096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3184
  • Cannabis sativa
  • SE4520096
  • Mutator
  • M9
  • scaffold51762:53-441
  • AATAATTTA
  • GAGTAATTTGTGGCATAAATACTTAAATTTAATTTTCGGTTACAAATAAGTACCTAAATTTAATTTTTGGCGGCAATAATACTGAAGTTATATTTCTGAAACTATATAGGTACCTGGTTGTTAAGTGTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
AATAATTTA                     C    A              A           C   A               C         G           C  A    ATA           T        G      AAATT        G  A     G      CCAAGTCA      TTT       TT
         GAGTAATTTGTGGCATAAATA TTAA TTTAATTTTCGGTT CAAATAAGTAC TAA TTTAATTTTTGGCGG AATAATACT AAGTTATATTT TG AACT   TAGGTACCTGG TGTTAAGT TTAAGT     TTCACGTG CA TTTTT ATTGGT        TGAATT   ATTTTTA  
         ||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||| || ||||   ||||||||||| |||||||| ||||||     |||||||| || ||||| ||||||        ||||||   |||||||  T
         CTCATTAAACGCCGTATTTAT AATT AAATTGAGGGCCAA GTTTATTTATG ATT AAATTAAAAATCGCC TTATTATGG TTCAATATAAA AT TTGA   ATTCATGGACT ACAATTTA AGTTCA     AGGTGCAT GT AAAAA TAACCA        ATTTAA   TAAAAAT  
ATTTTATAA                     A    C              C           A   C               A         A           A  C    GAC           C        -      GTAAT        A  A     A      ---TATAA      --T       TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End