SE4530098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3186
  • Cannabis sativa
  • SE4530098
  • hAT
  • Hat18
  • scaffold6886:37802-38036
  • CTCACACT
  • CAGGGACGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCACACT   G            AATAAGATTGTGGGGGCTATAGCCCCCACTAAAAAAAAAGTTAGTGTGAAAAAAAATTAAATATTTTCTATTTAATTAAATTATTATACAACA
        CAG GACGGACACACT                                                                                             
        ||| ||||||||||||                                                                                             A
        GTC CTGCCTGGGTCT                                                                                             
TCACACTC   A            TAAAAACTAGACACCCCCGAATTAACAATATTTTTATAAATAATAAATGAAATGTAATTTTAATATTGATAAAACACCCCCGAAAAATGATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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